The civil war in Tajikistan began in May 1992 when ethnic groups from the Garm and Gorno-Badakhshan regions, which were underrepresented in the ruling elite, rose up against the national government of President Rahmon Nabiyev, in which people from the Leninabad and Kulyab regions dominated.
Politically, the discontented groups were represented by liberal democratic reformists and Islamists, who fought together and later organized under the banner of the United Tajik Opposition.
By June 1997 fifty to one hundred thousand people had been killed. President Rahmonov, UTO leader Sayid Abdulloh Nuri, and Special Representative of the United Nations Secretary-General Gerd Merrem signed the "General Agreement on the Establishment of Peace and National Accord in Tajikistan" and the "Moscow Protocol" on 27th June1997 in Moscow, Russia, ending the war.
Continued stalemate and peace
Other combatants and armed bands that flourished in this civil chaos simply reflected the breakdown of central authority rather than loyalty to a political faction. In response to the violence the United Nations Mission of Observers in Tajikistan was deployed. Most fighting in the early part of the war occurred in the southern part of the country, but by 1996 the rebels were combating Russian troops in the capital city of Dushanbe. Islamic radicals from northern Afghanistan also began to fight Russian troops in the region. A UN-sponsored armistice finally ended the war in 1997. This was in part fostered by the Inter-Tajik Dialogue, a Track II diplomacy initiative in which the main players were brought together by international actors, namely the United States and Russia. The peace agreement completely eliminated Leninabad region (Khujand) from power. Presidential elections were held on November 6, 1999.
The UTO warned in letters to United Nations Secretary General Kofi Annan and Tajik President Emomali Rahmonov on 23 June 1997 that it would not sign the proposed peace agreement on June 27 if prisoner exchanges and the allocation of jobs in the coalition government were not outlined in the agreement. Akbar Turajonzoda, second-in-command of the UTO, repeated this warning on 26 June, but said both sides were negotiating. President Rahmonov, UTO leader Sayid Abdulloh Nuri, and Russian President Boris Yeltsin met in the Kremlin in Moscow, Russia on 26 June to finish negotiating the peace agreement. The Tajik government had previously pushed for settling these issues after the two sides signed the agreement, with the posts in the coalition government decided by a joint commission for national reconciliation and prisoner exchanges by a future set of negotiations. Russian Foreign Minister Yevgeny Primakov met with the Foreign Ministers of Iran, Kazakhstan and Turkmenistan to discuss the proposed peace accord.
By the end of the war Tajikistan was in a state of complete devastation. The estimated dead numbered from 50,000 to as many as 100,000. Around 1.2 million people were refugees inside and outside of the country. Tajikistan's physical infrastructure, government services, and economy were in disarray and much of the population was surviving on subsistence hand outs from international aid organizations. The United Nations established a Mission of Observers in December 1994, maintaining peace negotiations until the warring sides signed a comprehensive peace agreement in 1997.
Journalists were particularly targeted for assassination and dozens of Tajik journalists died. Many more fled the country leading to a brain drain. Notable individuals killed include journalist and politician Otakhon Latifi, journalist and Jewish leader Meirkhaim Gavrielov, politician Safarali Kenjayev, and four members of the United Nations Mission of Observers in Tajikistan: Yutaka Akino, a noted Japanese scholar of Central Asian history, Major Ryszard Szewczyk from Poland; Major Adolfo Scharpegge from Uruguay; and Jourajon Mahramov from Tajikistan; and documentary filmmaker Arcady Ruderman.
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